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All Versions

v1.0.2 (2020-11-23)

Fix

  • remove other heudiconv directories that messup overwrite
  • remove other heudiconv directories that messup overwrite
  • add blank space before heudiconv's overwrite flag
  • add blank space before heudiconv's overwrite flag

v1.0.1 (2020-11-17)

Perf

  • capture duplicate warnings

Fix

  • overwrite: don't ignore errors, and pass flag to heudiconv
  • bring back saving the file after setting DICOM header

v1.0.0 (2020-10-22)

Refactor

  • Merge pull request #47 from brown-bnc/feat/add-documentation
  • --verbose and --very verbose for postprocess
  • change the format of CLI inputs to be consistent to unix style
  • put dicom-expoert and run-heudiconv back in separate files
  • dicom_export: clomplete options/inputs and run through
  • WIP: add dicom_export to xnat2bids_typer
  • WIP: start skeleton for typer cli for xnat2bids

BREAKING CHANGE

  • Changes the CLI to use typer, adds MkDocs, pre-commit hooks and Github Actions

Fix

  • bring back lost build-system from pyproject file
  • get xnat2bids and tests back working
  • adjust sintax for commands in separate files

Feat

  • transition posprocessing to typer

v0.1.7 (2020-07-06)

Fix

  • tests: add full path and make sequences strings
  • tests: add misssing imports
  • fixes to logging, seriesDescList indexing and dicom extension (.IMA)

Feat

  • WIP working on overwrite behavior
  • add identifier to logfiles
  • check dicom extension, add formatting

v0.1.6 (2020-05-28)

Fix

  • put back the poetry.lock, didn't know it was needed for the docker build
  • add session to the path of IntendedFor nii file

v0.1.5 (2020-05-22)

v0.1.4 (2020-05-19)

v0.1.3 (2020-04-08)

Feat

  • Add files and functions to insert IntendedFor field
  • add --session_suffix as a required input

v0.1.2 (2020-03-09)

Fix

  • coloredlogs respect logging level

Feat

  • add minimal test to have the ability of making sure things don't break
  • add --skilist to arguments

v0.1.1 (2020-03-06)

Fix

  • We are now using SSL!

v0.1.0 (2020-02-28)

Fix

  • enter password only once for xnat2bids

v0.1.0-beta (2020-02-26)

Fix

  • remove heudiconv extras
  • make host optional to use default value
  • remove bid_validator, fix empty log, parse only know args
  • bidsmap now works properly. Add missing arguments
  • names are no longer converted to lower-case

Feat

  • add color to logging
  • ask for password, add logging, add sequence list

0.1.0-alpha (2020-02-18)

Fix

  • remove selected list
  • change dicom tags to match bidsname for protocol and series description
  • miscelaneous typo/type errors
  • use argument bidsmap json file, take logs out of bids directory
  • replace undescores for dashes in session and subject labels
  • add xnat_tools to module imports
  • user variable for bids_root_dir instead of hardcoded path
  • add package prefix to imports

Feat

  • detect multiple runs
  • handle aascout planes and mprage rms
  • add xnat2bids code
  • bring in xnat2bids code from plugin