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bids_postprocess

Script for performing post BIDSIFY processing. At the moment it inserts the IntendedFor field to JSON sidecart for fieldmap data

Usage:

$ bids_postprocess [OPTIONS] BIDS_EXPERIMENT_DIR

Arguments:

  • BIDS_EXPERIMENT_DIR: Root output directory for exporting the files [required]

Options:

  • -u, --user TEXT: XNAT User
  • -p, --pass TEXT: XNAT Password
  • --session TEXT: XNAT Session ID, that is the Accession # for an experiment.
  • -n, --includesess TEXT: Include this session only, this flag can be specified multiple time
  • -i, --includesubj TEXT: Include this participant only, this flag can be specified multiple times
  • -s, --skipsubj TEXT: Skip this participant, this flag can be specified multiple times
  • -k, --skipsess TEXT: Skip this session, this flag can be specified multiple times
  • --log-file TEXT: File to send logs to
  • -v, --verbose: Verbosity level. This flag can be specified multiple times to increase verbosity [default: 0]
  • --overwrite: Inititate BIDS post-processing on all subjects located at the specified BIDS directory, with intent to ovewrite existing data.
  • --install-completion: Install completion for the current shell.
  • --show-completion: Show completion for the current shell, to copy it or customize the installation.
  • --help: Show this message and exit.