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Installation

Using Docker

docker pull docker pull brownbnc/xnat_tools:<version>

Version:

  • latest: Is the build of master
  • vX.X.X: Latest tagged stable release

You can confirm the tags here

Using Python

Prerequisites:

We first need to install the dcm2niix . This is a dependency of Heudiconv that doesn't get installed by Heudiconv itself

brew install dcm2niix

PIPX

Most users only need to interact with the command-line utilities provided by xnat-tools. In this case, we recommend using pipx. Please check their installation instructions.

Once pipx is installed you will need to install Heudiconv and xnat-tools as stand-alone applications as follows:

pipx install heudiconv
pipx install git+https://github.com/brown-bnc/xnat-tools.git@v1.0.6

The command above installs the latest tagged release of xnat-tools. If you want to install the development version (main branch) you can run:

pipx install git+https://github.com/brown-bnc/xnat-tools.git

PIP

  • A Tagged Release
pip install git+https://github.com/brown-bnc/xnat-tools.git@v1.0.6
  • Development (Master branch)
pip install git+https://github.com/brown-bnc/xnat-tools.git

Poetry

This package is developed using Poetry. If you are familiar with Poetry, you can add it to your project via

poetry add git+https://github.com/brown-bnc/xnat-tools.git

or for a tagged release

poetry add git+https://github.com/brown-bnc/xnat-tools.git@v1.0.6